Publications 2009

– Alvarez N, Thiel-Egenter C, Tribsch A, Holderegger R, Manel S, Schonswetter P, Taberlet P, Brodbeck S, Gaudeul M, Gielly L, Kupfer P, Mansion G, Negrini R, Paun O, Pellecchia M, Rioux D, Schupfer F, Van Loo M, Winkler M, Gugerli F, IntraBioDiv C (2009) History or ecology ? Substrate type as a major driver of patial genetic structure in Alpine plants. Ecology Letters 12, 632-640.

– Anderson BJ, Akcakaya HR, Araujo MB, Fordham DA, Martinez-Meyer E, Thuiller W, Brook BW (2009) Dynamics of range margins for metapopulations under climate change. Proceedings of the Royal Society B-Biological Sciences 276, 1415-1420.

– Araujo MB, Thuiller W, Yoccoz NG (2009) Reopening the climate envelope reveals macroscale associations with climate in European birds. Proceedings of the National Academy of Sciences of the United States of America 106, E45-E46.

– Archaux F, Camaret S, Dupouey JL, Ulrich E, Corcket E, Bourjot L, Brethes A, Chevalier R, Dobremez JF, Dumas Y, Dume G, Foret M, Forgeard F, Gallet ML, Picard JF, Richard F, Savoie JM, Seytre L, Timbal J, Touffet J (2009) Can we reliably estimate species richness with large plots ? an assessment through calibration training. Plant Ecology 203, 303-315.

– Ayrault S, Catinon M, Clochiatti R, Tissut M, Asta J (2009) Complementarity of analytical tools in biomonitoring studies. Journal of Radioanalytical and Nuclear Chemistry 281, 131-136.

– Babik W, Taberlet P, Ejsmond MJ, Radwan J (2009) New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system. Molecular Ecology Resources 9, 713-719.

– Baptist F, Tcherkez G, Aubert S, Pontailler JY, Choler P, Nogues S (2009) C-13 and N-15 allocations of two alpine species from early and late snowmelt locations reflect their different growth strategies. Journal of Experimental Botany 60, 2725-2735.

– Barbet-Massin M, Walther BA, Thuiller W, Rahbek C, Jiguet F (2009) Potential impacts of climate change on the winter distribution of Afro-Palaearctic migrant passerines. Biology Letters 5, 248-251.

– Beaumont LJ, Gallagher RV, Downey PO, Thuiller W, Leishman MR, Hughes L (2009) Modelling the impact of Hieracium spp. on protected areas in Australia under future climates. Ecography 32, 757-764.

– Beaumont LJ, Gallagher RV, Thuiller W, Downey PO, Leishman MR, Hughes L (2009) Different climatic envelopes among invasive populations may lead to underestimations of current and future biological invasions. Diversity and Distributions 15, 409-420.

– Bonenfant C, Gaillard JM, Coulson T, Festa-Bianchet M, Loison A, Garel M, Loe LE, Blanchard P, Pettorelli N, Owen-Smith N, Du Toit J, Duncan P (2009) Empirical Evidence of Density-Dependence in Populations of Large Herbivores. In : Advances in Ecological Research, Vol 41, pp. 313-357.

– Bonin A, Paris M, Tetreau G, David JP, Despres L (2009) Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide : sequence and gene expression variations. Bmc Genomics 10.

– Catinon M, Ayrault S, Boudouma O, Asta J, Tissut M, Ravanel P (2009) The inclusion of atmospheric particles into the bark suber of ash trees. Chemosphere 77, 1313-1320.

– Catinon M, Ayrault S, Clocchiatti R, Boudouma O, Asta J, Tissut M, Ravanel P (2009) The anthropogenic atmospheric elements fraction : A new interpretation of elemental deposits on tree barks. Atmospheric Environment 43, 1124-1130.

– Christianson D, Creel S (2009) Effects of grass and browse consumption on the winter mass dynamics of elk. Oecologia 158, 603-613.

– Christianson D, Creel S (2009) Fecal chlorophyll describes the link between primary production and consumption in a terrestrial herbivore. Ecological Applications 19, 1323-1335.

– Coetzee BWT, Robertson MP, Erasmus BFN, van Rensburg BJ, Thuiller W (2009) Ensemble models predict Important Bird Areas in southern Africa will become less effective for conserving endemic birds under climate change. Global Ecology and Biogeography 18, 701-710.

– Cvetkovic D, Tomasevic N, Ficetola GF, Crnobrnja-Isailovic J, Miaud C (2009) Bergmann’s rule in amphibians : combining demographic and ecological parameters to explain body size variation among populations in the common toad Bufo bufo. Journal of Zoological Systematics and Evolutionary Research 47, 171-180.

– Da Silva A, Gaillard JM, Yoccoz NG, Hewison AJM, Galan M, Coulson T, Allaine D, Vial L, Delorme D, Van Laere G, Klein F, Luikart G (2009) HETEROZYGOSITY-FITNESS CORRELATIONS REVEALED BY NEUTRAL AND CANDIDATE GENE MARKERS IN ROE DEER FROM A LONG-TERM STUDY. Evolution 63, 403-417.

– de Bello F, Buchmann N, Casals P, Leps J, Sebastia MT (2009) Relating plant species and functional diversity to community delta C-13 in NE Spain pastures. Agriculture Ecosystems & Environment 131, 303-307.

– de Bello F, Thuiller W, Leps J, Choler P, Clement JC, Macek P, Sebastia MT, Lavorel S (2009) Partitioning of functional diversity reveals the scale and extent of trait convergence and divergence. Journal of Vegetation Science 20, 475-486.

– Durand E, Jay F, Gaggiotti OE, Francois O (2009) Spatial Inference of Admixture Proportions and Secondary Contact Zones. Molecular Biology and Evolution 26, 1963-1973.

– Evette A, Labonne S, Rey F, Liebault F, Jancke O, Girel J (2009) History of Bioengineering Techniques for Erosion Control in Rivers in Western Europe. Environmental Management 43, 972-984.

– Feld CK, da Silva PM, Sousa JP, de Bello F, Bugter R, Grandin U, Hering D, Lavorel S, Mountford O, Pardo I, Partel M, Rombke J, Sandin L, Jones KB, Harrison P (2009) Indicators of biodiversity and ecosystem services : a synthesis across ecosystems and spatial scales. Oikos 118, 1862-1871.

– Ficetola GF, Denoel M (2009) Ecological thresholds : an assessment of methods to identify abrupt changes in species-habitat relationships. Ecography 32, 1075-1084.

– Ficetola GF, Thuiller W, Padoa-Schioppa E (2009) From introduction to the establishment of alien species : bioclimatic differences between presence and reproduction localities in the slider turtle. Diversity and Distributions 15, 108-116.

– Fortunel C, Garnier E, Joffre R, Kazakou E, Quested H, Grigulis K, Lavorel S, Ansquer P, Castro H, Cruz P, Dolezal J, Eriksson O, Freitas H, Golodets C, Jouany C, Kigel J, Kleyer M, Lehsten V, Leps J, Meier T, Pakeman R, Papadimitriou M, Papanastasis VP, Quetier F, Robson M, Sternberg M, Theau JP, Thebault A, Zarovali M (2009) Leaf traits capture the effects of land use changes and climate on litter decomposability of grasslands across Europe. Ecology 90, 598-611.

– Gaggiotti OE, Bekkevold D, Jorgensen HBH, Foll M, Carvalho GR, Andre C, Ruzzante DE (2009) Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations : atlantic herring as a case study. Evolution 63, 2939-2951.

– Garel M, Loison A, Jullien JM, Dubray D, Maillard D, Gaillard JM (2009) SEX-SPECIFIC GROWTH IN ALPINE CHAMOIS. Journal of Mammalogy 90, 954-960.

– Gebremedhin B, Ficetola GF, Naderi S, Rezaei HR, Maudet C, Rioux D, Luikart G, Flagstad O, Thuiller W, Taberlet P (2009) Combining genetic and ecological data to assess the conservation status of the endangered Ethiopian walia ibex. Animal Conservation 12, 89-100.

– Gebremedhin B, Ficetola GF, Naderi S, Rezaei HR, Maudet C, Rioux D, Luikart G, Flagstad O, Thuiller W, Taberlet P (2009) Frontiers in identifying conservation units : from neutral markers to adaptive genetic variation. Animal Conservation 12, 107-109.

– Gross N, Kunstler G, Liancourt P, de Bello F, Suding KN, Lavorel S (2009) Linking individual response to biotic interactions with community structure : a trait-based framework. Functional Ecology 23, 1167-1178.

– Hickler T, Fronzek S, Araujo MB, Schweiger O, Thuiller W, Sykes MT (2009) An ecosystem model-based estimate of changes in water availability differs from water proxies that are commonly used in species distribution models. Global Ecology and Biogeography 18, 304-313.

– Houniet DT, Thuiller W, Tolley KA (2009) Potential effects of predicted climate change on the endemic South African Dwarf Chameleons, Bradypodion. African Journal of Herpetology 58, 28-35.

– Ibanez S, Despres L (2009) Ecological conditions promoting plant specialization on a seed-eating pollinator differ from those stabilizing the interaction. Evolutionary Ecology Research 11, 921-934.

– Ibanez S, Dujardin G, Despres L (2009) Stability of floral specialization in Trollius europaeus in contrasting ecological environments. Journal of Evolutionary Biology 22, 1183-1192.

– Ibanez S, Gallet C, Dommanget F, Despres L (2009) Plant chemical defence : a partner control mechanism stabilising plant - seed-eating pollinator mutualisms. Bmc Evolutionary Biology 9.

– Kilinc O, Reynaud S, Perez L, Tissut M, Ravanel P (2009) Physiological and biochemical modes of action of the diphenylether aclonifen. Pesticide Biochemistry and Physiology 93, 65-71.

– Klimesova J, de Bello F (2009) CLO-PLA : the database of clonal and bud bank traits of Central European flora. Journal of Vegetation Science 20, 511-516.

– Knapp S, Kuhn I, Bakker JP, Kleyer M, Klotz S, Ozinga WA, Poschlod P, Thompson K, Thuiller W, Romermann C (2009) How species traits and affinity to urban land use control large-scale species frequency. Diversity and Distributions 15, 533-546.

– Liancourt P, Viard-Cretat F, Michalet R (2009) Contrasting community responses to fertilization and the role of the competitive ability of dominant species. Journal of Vegetation Science 20, 138-147.

– Luck GW, Harrington R, Harrison PA, Kremen C, Berry PM, Bugter R, Dawson TP, de Bello F, Diaz S, Feld CK, Haslett JR, Hering D, Kontogianni A, Lavorel S, Rounsevell M, Samways MJ, Sandin L, Settele J, Sykes MT, van den Hove S, Vandewalle M, Zobel M (2009) Quantifying the Contribution of Organisms to the Provision of Ecosystem Services. Bioscience 59, 223-235.

– Macek P, Mackova J, de Bello F (2009) Morphological and ecophysiological traits shaping altitudinal distribution of three Polylepis treeline species in the dry tropical Andes. Acta Oecologica-International Journal of Ecology 35, 778-785.

– Manel S, Conord C, Despres L (2009) Genome scan to assess the respective role of host-plant and environmental constraints on the adaptation of a widespread insect. Bmc Evolutionary Biology 9.

– Manel S, Segelbacher G (2009) Perspectives and challenges in landscape genetics. Molecular Ecology 18, 1821-1822.

– Marcombe S, Poupardin R, Darriet F, Reynaud S, Bonnet J, Strode C, Brengues C, Yebakima A, Ranson H, Corbel V, David JP (2009) Exploring the molecular basis of insecticide resistance in the dengue vector Aedes aegypti : a case study in Martinique Island (French West Indies). Bmc Genomics 10.

– Marmion M, Hjort J, Thuiller W, Luoto M (2009) Statistical consensus methods for improving predictive geomorphology maps. Computers & Geosciences 35, 615-625.

– Marmion M, Luoto M, Heikkinen RK, Thuiller W (2009) The performance of state-of-the-art modelling techniques depends on geographical distribution of species. Ecological Modelling 220, 3512-3520.

– Marmion M, Parviainen M, Luoto M, Heikkinen RK, Thuiller W (2009) Evaluation of consensus methods in predictive species distribution modelling. Diversity and Distributions 15, 59-69.

– Marquis O, Miaud C, Ficetola GF, Bocher A, Mouchet F, Guittonneau S, Devaux A (2009) Variation in genotoxic stress tolerance among frog populations exposed to UV and pollutant gradients. Aquatic Toxicology 95, 152-161.

– Martin G, Cruz P, Theau JP, Jouany C, Fleury P, Granger S, Faivre R, Balente G, Lavorel S, Duru M (2009) A multi-site study to classify semi-natural grassland types. Agriculture Ecosystems & Environment 129, 508-515.

– Medugorac I, Medugorac A, Russ I, Veit-Kensch CE, Taberlet P, Luntz B, Mix HM, Forster M (2009) Genetic diversity of European cattle breeds highlights the conservation value of traditional unselected breeds with high effective population size. Molecular Ecology 18, 3394-3410.

– Mooney H, Larigauderie A, Cesario M, Elmquist T, Hoegh-Guldberg O, Lavorel S, Mace GM, Palmer M, Scholes R, Yahara T (2009) Biodiversity, climate change, and ecosystem services. Current Opinion in Environmental Sustainability 1, 46-54.

– Moretti M, de Bello F, Roberts SPM, Potts SG (2009) Taxonomical vs. functional responses of bee communities to fire in two contrasting climatic regions. Journal of Animal Ecology 78, 98-108.

– Morin X, Thuiller W (2009) Comparing niche- and process-based models to reduce prediction uncertainty in species range shifts under climate change. Ecology 90, 1301-1313.

– Mraz P, Chrtek J, Singliarova B (2009) Geographical parthenogenesis, genome size variation and pollen production in the arctic-alpine species Hieracium alpinum. Botanica Helvetica 119, 41-51.

– Neiman M, Meirmans S, Meirmans PG (2009) What Can Asexual Lineage Age Tell Us about the Maintenance of Sex ? In : Year in Evolutionary Biology 2009, pp. 185-200.

– Niu KC, Choler P, Zhao BB, Du GZ (2009) The allometry of reproductive biomass in response to land use in Tibetan alpine grasslands. Functional Ecology 23, 274-283.

– Ozenda P (2009) On the genesis of the plant population in the Alps : New or critical aspects. Comptes Rendus Biologies 332, 1092-1103.

– Pages M, Maudet C, Bellemain E, Taberlet P, Hughes S, Hanni C (2009) A system for sex determination from degraded DNA : a useful tool for palaeogenetics and conservation genetics of ursids. Conservation Genetics 10, 897-907.

– Pakeman RJ, Leps J, Kleyer M, Lavorel S, Garnier E, Consortium V (2009) Relative climatic, edaphic and management controls of plant functional trait signatures. Journal of Vegetation Science 20, 148-159.

– Parker-Allie F, Musil CF, Thuiller W (2009) Effects of climate warming on the distributions of invasive Eurasian annual grasses : a South African perspective. Climatic Change 94, 87-103.

– Parviainen M, Marmion M, Luoto M, Thuiller W, Heikkinen RK (2009) Using summed individual species models and state-of-the-art modelling techniques to identify threatened plant species hotspots. Biological Conservation 142, 2501-2509.

– Pegard A, Miquel C, Valentini A, Coissac E, Bouvier F, Francois D, Taberlet P, Engel E, Pompanon F (2009) Universal DNA-Based Methods for Assessing the Diet of Grazing Livestock and Wildlife from Feces. Journal of Agricultural and Food Chemistry 57, 5700-5706.

– Poncet BN, Garat P, Manel S, Bru N, Sachet JM, Roques A, Despres L (2009) The effect of climate on masting in the European larch and on its specific seed predators. Oecologia 159, 527-537.

– Quiroz CL, Choler P, Baptist F, Gonzalez-Teuber M, Molina-Montenegro MA, Cavieres LA (2009) Alpine dandelions originated in the native and introduced range differ in their responses to environmental constraints. Ecological Research 24, 175-183.

– Randin CF, Engler R, Normand S, Zappa M, Zimmermann NE, Pearman PB, Vittoz P, Thuiller W, Guisan A (2009) Climate change and plant distribution : local models predict high-elevation persistence. Global Change Biology 15, 1557-1569.

– Riaz MA, Poupardin R, Reynaud S, Strode C, Ranson H, David JP (2009) Impact of glyphosate and benzo a pyrene on the tolerance of mosquito larvae to chemical insecticides. Role of detoxification genes in response to xenobiotics. Aquatic Toxicology 93, 61-69.

– Roura-Pascual N, Bas JM, Thuiller W, Hui C, Krug RM, Brotons L (2009) From introduction to equilibrium : reconstructing the invasive pathways of the Argentine ant in a Mediterranean region. Global Change Biology 15, 2101-2115.

– Roura-Pascual N, Brotons L, Peterson AT, Thuiller W (2009) Consensual predictions of potential distributional areas for invasive species : a case study of Argentine ants in the Iberian Peninsula. Biological Invasions 11, 1017-1031.

– Saccone P, Delzon S, Pages JP, Brun JJ, Michalet R (2009) The role of biotic interactions in altering tree seedling responses to an extreme climatic event. Journal of Vegetation Science 20, 403-414.

– Sachet JM, Poncet B, Roques A, Despres L (2009) Adaptive radiation through phenological shift : the importance of the temporal niche in species diversification. Ecological Entomology 34, 81-89.

– Schob C, Kammer PM, Choler P, Veit H (2009) Small-scale plant species distribution in snowbeds and its sensitivity to climate change. Plant Ecology 200, 91-104.

– Seo C, Thorne JH, Hannah L, Thuiller W (2009) Scale effects in species distribution models : implications for conservation planning under climate change. Biology Letters 5, 39-43.

– Soininen EM, Valentini A, Coissac E, Miquel C, Gielly L, Brochmann C, Brysting AK, Sonstebo JH, Ims RA, Yoccoz NG, Taberlet P (2009) Analysing diet of small herbivores : the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures. Frontiers in Zoology 6.

– Thiel-Egenter C, Gugerli F, Alvarez N, Brodbeck S, Cieslak E, Colli L, Englisch T, Gaudeul M, Gielly L, Korbecka G, Negrini R, Paun O, Pellecchia M, Rioux D, Ronikier M, Schonswetter P, Schupfer F, Taberlet P, Tribsch A, van Loo M, Winkler M, Holderegger R, IntraBioDiv C (2009) Effects of species traits on the genetic diversity of high-mountain plants : a multi-species study across the Alps and the Carpathians. Global Ecology and Biogeography 18, 78-87.

– Thuiller W, Lafourcade B, Engler R, Araujo MB (2009) BIOMOD - a platform for ensemble forecasting of species distributions. Ecography 32, 369-373.

– Tolon V, Dray S, Loison A, Zeileis A, Fischer C, Baubet E (2009) Responding to spatial and temporal variations in predation risk : space use of a game species in a changing landscape of fear. Canadian Journal of Zoology-Revue Canadienne De Zoologie 87, 1129-1137.

– Valentini A, Miquel C, Nawaz MA, Bellemain E, Coissac E, Pompanon F, Gielly L, Cruaud C, Nascetti G, Wincker P, Swenson JE, Taberlet P (2009) New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing : the trnL approach. Molecular Ecology Resources 9, 51-60.

– Valentini A, Pompanon F, Taberlet P (2009) DNA barcoding for ecologists. Trends in Ecology & Evolution 24, 110-117.

– Vallecillo S, Brotons L, Thuiller W (2009) Dangers of predicting bird species distributions in response to land-cover changes. Ecological Applications 19, 538-549.

– Viard-Cretat F, Gallet C, Lefebvre M, Lavorel S (2009) A leachate a day keeps the seedlings away : mowing and the inhibitory effects of Festuca paniculata in subalpine grasslands. Annals of Botany 103, 1271-1278.

– Walther GR, Roques A, Hulme PE, Sykes MT, Pysek P, Kuhn I, Zobel M, Bacher S, Botta-Dukat Z, Bugmann H, Czucz B, Dauber J, Hickler T, Jarosik V, Kenis M, Klotz S, Minchin D, Moora M, Nentwig W, Ott J, Panov VE, Reineking B, Robinet C, Semenchenko V, Solarz W, Thuiller W, Vila M, Vohland K, Settele J (2009) Alien species in a warmer world : risks and opportunities. Trends in Ecology & Evolution 24, 686-693.

– Wookey PA, Aerts R, Bardgett RD, Baptist F, Brathen KA, Cornelissen JHC, Gough L, Hartley IP, Hopkins DW, Lavorel S, Shaver GR (2009) Ecosystem feedbacks and cascade processes : understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology 15, 1153-1172.

– Zimmermann NE, Yoccoz NG, Edwards TC, Meier ES, Thuiller W, Guisan A, Schmatz DR, Pearman PB (2009) Climatic extremes improve predictions of spatial patterns of tree species. Proceedings of the National Academy of Sciences of the United States of America 106, 19723-19728.

– Zinger L, Coissac E, Choler P, Geremia RA (2009) Assessment of Microbial Communities by Graph Partitioning in a Study of Soil Fungi in Two Alpine Meadows. Applied and Environmental Microbiology 75, 5863-5870.

– Zinger L, Shahnavaz B, Baptist F, Geremia RA, Choler P (2009) Microbial diversity in alpine tundra soils correlates with snow cover dynamics. Isme Journal 3, 850-859.

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Publications 2009